HOXD9

HOXD9
Identifiers
Aliases	HOXD9, HOX4, HOX4C, Hox-4.3, Hox-5.2, homeobox D9
External IDs	MGI: 96210 HomoloGene: 8409 GeneCards: HOXD9
Gene location (Human)
Chr.	Chromosome 2 (human)[1]
End	176,124,937 bp[1]
Gene location (Mouse)
Chr.	Chromosome 2 (mouse)[2]
End	74,700,208 bp[2]
RNA expression pattern
	More reference expression data
Gene ontology
Molecular function	• DNA binding; • sequence-specific DNA binding; • RNA polymerase II regulatory region sequence-specific DNA binding; • transcription factor activity, sequence-specific DNA binding; • transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding; • RNA polymerase II transcription factor activity, sequence-specific DNA binding;
Cellular component	• cell nucleus; • nucleolus;
Biological process	• embryonic skeletal system morphogenesis; • forelimb morphogenesis; • peripheral nervous system neuron development; • proximal/distal pattern formation; • regulation of transcription, DNA-templated; • adult locomotory behavior; • negative regulation of transcription from RNA polymerase II promoter; • hindlimb morphogenesis; • transcription, DNA-templated; • single fertilization; • embryonic skeletal system development; • mammary gland development; • multicellular organism development; • regulation of gene expression; • skeletal muscle tissue development; • embryonic forelimb morphogenesis; • anterior/posterior pattern specification; • positive regulation of transcription from RNA polymerase II promoter;
	Sources:Amigo / QuickGO
Orthologs
	3235
	15438
	ENSG00000128709
	ENSMUSG00000043342
	P28356
	P28357
	NM_014213
	NM_013555
	NP_055028
	NP_038583
	Wikidata
View/Edit Human	View/Edit Mouse

Homeobox protein Hox-D9 is a protein that in humans is encoded by the HOXD9 gene.^[5]^[6]^[7]

Function

This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, located on different chromosomes, consisting of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXD genes located at 2q31-2q37 chromosome regions. Deletions that removed the entire HOXD gene cluster or 5' end of this cluster have been associated with severe limb and genital abnormalities. The exact role of this gene has not been determined.^[7]

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000128709 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000043342 - Ensembl, May 2017
↑ "Human PubMed Reference:".
↑ "Mouse PubMed Reference:".
↑ McAlpine PJ, Shows TB (Aug 1990). "Nomenclature for human homeobox genes". Genomics. 7 (3): 460. doi:10.1016/0888-7543(90)90186-X. PMID 1973146.
↑ Scott MP (Dec 1992). "Vertebrate homeobox gene nomenclature". Cell. 71 (4): 551–3. doi:10.1016/0092-8674(92)90588-4. PMID 1358459.
1 2 "Entrez Gene: HOXD9 homeobox D9".

Zappavigna V, Renucci A, Izpisúa-Belmonte JC, Urier G, Peschle C, Duboule D (1992). "HOX4 genes encode transcription factors with potential auto- and cross-regulatory capacities". EMBO J. 10 (13): 4177–87. PMC 453170. PMID 1756725.
Oliver G, Sidell N, Fiske W, Heinzmann C, Mohandas T, Sparkes RS, De Robertis EM (1989). "Complementary homeo protein gradients in developing limb buds". Genes Dev. 3 (5): 641–50. doi:10.1101/gad.3.5.641. PMID 2568311.
Acampora D, D'Esposito M, Faiella A, Pannese M, Migliaccio E, Morelli F, Stornaiuolo A, Nigro V, Simeone A, Boncinelli E (1990). "The human HOX gene family". Nucleic Acids Res. 17 (24): 10385–402. doi:10.1093/nar/17.24.10385. PMC 335308. PMID 2574852.
Kanzler B, Viallet JP, Le Mouellic H, Boncinelli E, Duboule D, Dhouailly D (1995). "Differential expression of two different homeobox gene families during mouse tegument morphogenesis". Int. J. Dev. Biol. 38 (4): 633–40. PMID 7779685.
Zappavigna V, Sartori D, Mavilio F (1994). "Specificity of HOX protein function depends on DNA-protein and protein-protein interactions, both mediated by the homeo domain". Genes Dev. 8 (6): 732–44. doi:10.1101/gad.8.6.732. PMID 7926763.
Zappavigna V, Falciola L, Helmer-Citterich M, Mavilio F, Bianchi ME (1996). "HMG1 interacts with HOX proteins and enhances their DNA binding and transcriptional activation". EMBO J. 15 (18): 4981–91. PMC 452236. PMID 8890171.
Phelan ML, Featherstone MS (1997). "Distinct HOX N-terminal arm residues are responsible for specificity of DNA recognition by HOX monomers and HOX.PBX heterodimers". J. Biol. Chem. 272 (13): 8635–43. doi:10.1074/jbc.272.13.8635. PMID 9079695.
Del Campo M, Jones MC, Veraksa AN, Curry CJ, Jones KL, Mascarello JT, Ali-Kahn-Catts Z, Drumheller T, McGinnis W (1999). "Monodactylous limbs and abnormal genitalia are associated with hemizygosity for the human 2q31 region that includes the HOXD cluster". Am. J. Hum. Genet. 65 (1): 104–10. doi:10.1086/302467. PMC 1378080. PMID 10364522.
de la Cruz CC, Der-Avakian A, Spyropoulos DD, Tieu DD, Carpenter EM (2000). "Targeted disruption of Hoxd9 and Hoxd10 alters locomotor behavior, vertebral identity, and peripheral nervous system development". Dev. Biol. 216 (2): 595–610. doi:10.1006/dbio.1999.9528. PMID 10642795.
Limongi MZ, Pelliccia F, Gaddini L, Rocchi A (2000). "Clustering of two fragile sites and seven homeobox genes in human chromosome region 2q31→q32.1". Cytogenet. Cell Genet. 90 (1–2): 151–3. doi:10.1159/000015651. PMID 11060466.
Goodman FR, Majewski F, Collins AL, Scambler PJ (2002). "A 117-kb Microdeletion Removing HOXD9–HOXD13 and EVX2 Causes Synpolydactyly". Am. J. Hum. Genet. 70 (2): 547–55. doi:10.1086/338921. PMC 384929. PMID 11778160.
Kosaki K, Kosaki R, Suzuki T, Yoshihashi H, Takahashi T, Sasaki K, Tomita M, McGinnis W, Matsuo N (2002). "Complete mutation analysis panel of the 39 human HOX genes". Teratology. 65 (2): 50–62. doi:10.1002/tera.10009. PMID 11857506.
Nguyen NC, Hirose T, Nakazawa M, Kobata T, Nakamura H, Nishioka K, Nakajima T (2002). "Expression of HOXD9 in fibroblast-like synoviocytes from rheumatoid arthritis patients". Int. J. Mol. Med. 10 (1): 41–8. doi:10.3892/ijmm.10.1.41. PMID 12060849.
Méchine-Neuville A, Lefebvre O, Bellocq JP, Kedinger M, Simon-Assmann P (2003). "[Increased expression of HOXA9 gene in Hirschsprung disease]". Gastroenterol. Clin. Biol. 26 (12): 1110–7. PMID 12520199.
Liu DB, Gu ZD, Cao XZ, Liu H, Li JY (2005). "Immunocytochemical detection of HoxD9 and Pbx1 homeodomain protein expression in Chinese esophageal squamous cell carcinomas". World J. Gastroenterol. 11 (10): 1562–6. doi:10.3748/wjg.v11.i10.1562. PMID 15770739.
Zhao X, Sun M, Zhao J, Leyva JA, Zhu H, Yang W, Zeng X, Ao Y, Liu Q, Liu G, Lo WH, Jabs EW, Amzel LM, Shan X, Zhang X (2007). "Mutations in HOXD13 Underlie Syndactyly Type V and a Novel Brachydactyly-Syndactyly Syndrome". Am. J. Hum. Genet. 80 (2): 361–71. doi:10.1086/511387. PMC 1785357. PMID 17236141.

External links

HOXD9+protein,+human at the US National Library of Medicine Medical Subject Headings (MeSH)

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000128709 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000043342 - Ensembl, May 2017

[3] "Human PubMed Reference:".

[4] "Mouse PubMed Reference:".

[pmid1973146-5] McAlpine PJ, Shows TB (Aug 1990). "Nomenclature for human homeobox genes". Genomics. 7 (3): 460. doi:10.1016/0888-7543(90)90186-X. PMID 1973146.

[pmid1358459-6] Scott MP (Dec 1992). "Vertebrate homeobox gene nomenclature". Cell. 71 (4): 551–3. doi:10.1016/0092-8674(92)90588-4. PMID 1358459.

[entrez-7] 1 2 "Entrez Gene: HOXD9 homeobox D9".

HOXD9

Function

See also

References

Further reading

External links