List of Philippine National Railways stations

• Valenzuela (Polo) – near Gen. T. de Leon Street (C5), Barangay General T. de Leon, Valenzuela City (under possible evaluation)
• Governor Pascual (Acacia) – Brgy. Acacia, Malabon City
• Caloocan (2nd) – Samson Road, Caloocan, opened in the 1950s, also known as Caloocan Kadiwa station
• Caloocan (Kalookan) – Sangandaan, Caloocan City
• Asistio Avenue (10th Ave) – Grace Park, Caloocan City
• C-3 (5th Ave) – Grace Park, Caloocan City (flag stop)
• Solis – Tondo, Manila
• Tutuban – Tondo, Manila

An abandoned branch line serving Tarlac and Nueva Ecija. This line was also planned to be extended to Cagayan with services linking almost all the provinces in the Cagayan Valley. PNR has requested for a feasibility study for the revival of the line, to be connected to the North-South Commuter Railway project.[4]

• Tarlac City – Tarlac City
• Balibago T. – Balibago, Tarlac (flag stop)
• Victoria – Victoria (ruins)
• Canarem – Canarem, Victoria (flag stop)

• Cordon – Cordon
• Santiago – Santiago
• Echague (proposed) – Echague (original terminus planned in 1946; line extended to Tuguegarao)

• Enrile – Enrile
• Tuguegarao (proposed) – Tuguegarao

Ceased operations when the San Juan River Bridge collapsed. Remains of the old railroad tracks from the old line are still present. The piers of the San Juan River bridge were still standing until they were demolished in 2018 due to the Skyway Stage 3 traversing through the river. It would be only feasible in the future to reactive just the Sta. Mesa-Mandaluyong parts of the line and the bridge rebuilt with possible elevated tracks on the final segment to the Guadalupe station, which links the PNR to EDSA and MRT Line 3 (the nearest stations are the Guadalupe Station in Makati and Boni Avenue Station in Mandaluyong).

• Santa Mesa – Bacood, Santa Mesa
• Cordillera – Bacood, Santa Mesa (flag stop, opened in 1974)
• Bagumbayan – Bacood, Santa Mesa (flag stop, opened in 1974)

This line is one of the branch lines that were abandoned after World War II. The line was reopened in 1969, however it was once again abandoned in 1980. If reactivated it will serve thousands of people and tourists as well as provide freight services to the provinces of Bulacan and Nueva Ecija. PNR has requested a feasibility study for a planned revival as a northeast commuter line to Makati, as part of the process for getting the final nod on the project.[4]

An abandoned branch line which used to serve the cities of Pasig, Marikina, and the province of Rizal.

• Rosario – Brgy. Rosario

• Marikina (Mariquina) – Marikina (still existing)
• Santo Niño – Brgy. Santo Niño (flag stop, opened in 1927)
• Bayanbayanan – Brgy. Bayanbayanan
• Nangka – Brgy. Nangka (flag stop, opened in 1927)

• San Mateo – San Mateo
• Burgos – Brgy. Burgos, Rodriguez (opened in 1928)
• Montalban – Brgy. Balite, Rodriguez (now serves as a basketball court, at the back of the Our Lady of the Most Holy Rosary Parish)

A line from Fort Stotsenburg in Angeles to Mabalacat, Pampanga

• Stotsenburg – Brgy. Sapangbato, Angeles
• Margot – Brgy. Margot, Angeles (opened in 1927)
• Dau – Brgy. Dau, Mabalacat

An abandoned branch line from Dau to Magalang.

• Dau – Brgy. Dau, Mabalacat, Pampanga
• Sapang Biabas – Brgy. Sapang Biabas, Mabalacat
• Bical – Brgy. Bical, Mabalacat
• Magalang – Brgy. San Pedro II, Magalang (still existing)

Abandoned after Nielson Field was closed.

• Pasay Road (Culi-culi/Pio Del Pilar) – Brgy. Pio del Pilar, Makati
• Legazpi Village – Legazpi Village, Brgy. San Lorenzo (near Nielson Field)

Abandoned line that served passengers and cargo going towards Tabaco City and its harbor.

• Legazpi – Legazpi, Albay
• Santo Domingo (Libog) – Santo Domingo, Albay
• Bacacay – Bacacay, Albay
• Malilipot – Malilipot, Albay
• Tabaco – Tabaco, Albay

An old line from Aringay, La Union to Baguio City. Due to being a mountainous route, several tunnels were constructed during the Spanish colonial period but abandoned during World War II. Two remnants of the line are the Aringay railroad triangle and the century-old tunnel in Brgy. Poblacion.

• Aringay – Aringay, La Union
• Baguio – Baguio

This is a line to Camp One, Rosario, La Union, the first railroad project attempting to reach Baguio, abandoned in 1914. A remnant is the triangle junction which was part of the rail tracks which is now roads.

• San Fabian – San Fabian, Pangasinan
• Binday – Brgy. Binday, San Fabian
• Alava – Brgy. Alava, San Fabian
• Camp One – Brgy. Camp One, Rosario, La Union

If reactivated, it would serve as a tourist line linking the PNR network to the Mount Arayat National Park and as a faster access to western parts of Pampanga, northern Bataan, southern Zambales and the Subic Bay Freeport Zone, with the possible construction in the future of a rail line linking the two economic zones.

If reactivated the line will serve residents and freight in Pangasinan, Nueva Ecija, and Tarlac.

• Paniqui – Paniqui

• Nampicuan – Nampicuan
• Cuyapo – Cuyapo
• Bued – Brgy. Bued, Cuyapo

Branch line from San Pablo, Laguna to Malvar, Batangas. It was abandoned after the Los Baños to San Pablo route was built, if reopened it would serve as an alternative to the main line.

• San Pablo – San Pablo City
• Santa Monica – Brgy. Santa Monica, San Pablo
• Magampon – San Pablo
• Alaminos – Alaminos, Laguna
• San Andres – Brgy. San Andres, Alaminos
• San Joaquin – Brgy. San Joaquin, Santo Tomas City, Batangas
• Camballao – Brgy. San Francisco, Santo Tomas (opened in 1928)
• Salvarrol – Brgy. San Francisco, Santo Tomas
• Malvar (Luta) – Malvar, Batangas

Abandoned tram line that was operated by the Tarlac Railway Company in Tarlac

• Paniqui – Paniqui
• Presidencia – Brgy. Cayanga, Paniqui
• Cabayaoasan – Brgy. Cabayaoasan, Paniqui
• Tarlac River – Brgy. Rang-Ayan, Paniqui
• Barang – Brgy. Barang, Paniqui
• Matubog – Brgy. Matubog, Camiling
• Camiling – Camiling

Cancelled during the planning stages. The route was supposed to be from Lingayen, Pangasinan to Camiling, Tarlac.

Branch line abandoned before the bed was completed and before any bridges had been constructed, the only remains of this line are the two railroad tunnels in Asin Road.

• Damortis – Brgy. Damortis, Rosario, La Union
• Tuba (proposed) – Tuba, Benguet

Abandoned before the bed was completed and before any bridges had been constructed

• Caba (proposed) – Caba
• Kapangan (proposed) – Kapangan, Benguet
• La Trinidad (proposed) – La Trinidad, Benguet
• Galiano (proposed) – Atok, Benguet

Very few, if not none of the original line exists today due to the path occupied presently by the Ninoy Aquino International Airport and various developments since the line's closure.

This is the last branch line that was used by PNR up to early 2000s. In 2010, the land area of the station in San Jose (now considered on the tip and under the jurisdiction of GMA Cavite between San Pedro and Carmona), was allegedly re-leased to the private sector and the old rails were dismantled halfway up to Olympia Street in Pacita Complex. The old rails still exists from Chrysanthemum Station up to Crismor Ave. in Elvinda near the old San Pedro Station and is at least still in use by the squatter's trolleys. This 3.9 km line was opened in 1973.

Though inactive at present, PNR intends to reintroduce services to this branch line sometime in 2019, and a potential repair work would soon begin in preparation of the line's reopening. DOTr officials inspected the line on August 19, 2018 to review its conditions in readiness for the resumption of operations.[5]

• San Pedro – San Vicente, San Pedro
• Chrysanthemum Village – San Pedro

• Carmona – Carmona, Cavite

An abandoned branch line serving Cavite City and parts of Noveleta.

• Caridad – Brgy. Caridad, Cavite City
• San Roque – Brgy. San Roque, Cavite City
• Cavite – Cavite City

Also known as the Santibañez line. This line had spurs leading to Isla Provisor, Luzon Brokerage Company, the closed Pandacan Oil Depot and the Johnson Picket Rope Company. It ends in what is now the Tabacalera Compound today. The bridge route's crossing in Pasig River is a mechanical swing bridge built to allow bigger ships to pass through. Today, not only is the mechanical component of the bridge nonfunctional, but the bridge itself cannot turn anymore due to the Pandacan Bridge built very close to its turning radius. The very bridge itself is still in use by trains, and occasionally by rickshaws and railskates.

• Pandacan (Beata) – Pandacan, Manila
• Santibañez – Paco, Manila

A 1.7 km line connecting the former Rongos wharf in the Bicol River for construction purposes, dismantled after the completion of the South Line in 1938

• Rongos – Brgy. Rongos, Libmanan [flag stop]
• Rongos Wharf – Brgy. Rongos, Libmanan

This inactive line, when reactivated, could serve passengers and freight in eastern parts of Laguna while providing a faster access to tourist and historical destinations within the province.

As part of the Long-Haul Railway project, which includes the construction of a new line to Bicol, the Calamba-Batangas City section of the branch will be reconstructed into a new single-track line, that will be expanded to two when capacity is needed to be expanded.

• Calamba – Brgy. 1, Calamba City
• Makiling – Brgy. Makiling, Calamba

• Santo Tomas – Santo Tomas
• Tanauan – Tanauan City
• Malvar (Luta) – Brgy. Poblacion, Malvar, Batangas [Terminus for the San Pablo-Malvar Line]
• Lipa – Lipa City
• San Jose – San Jose, Batangas
• Batangas – near the Batangas Provincial Capitol
• Bauan – Bauan

This branch line, currently inactive, is the nearest rail link to the Nuvali residential township of Ayala Land, which extends to Calamba City to the south, as well as to Tagaytay. It is also a potential branch line for a revived freight service from Metro Manila in the future, since a multimodal freight terminal was from the 1990s up to 2001 served by this line via container trains from the capital region.

• Mamatid – Mamatid, Cabuyao City
• Majapa – Brgy. Majapa, Calamba, Laguna
• Canlubang – Canlubang, Calamba
• Locomotive – Canlubang, Calamba
• Buntog – Sitio Buntog, Canlubang, Calamba

An unfinished branch line built in the 1970s, with the only remnant being a railroad overpass in the South Luzon Expressway. If possibly completed the line would serve residents in the Eton City township area in Santa Rosa, as well as in the other urban townships in Western Laguna, providing a direct rail link to Metro Manila from these townships, which currently depend on road transport.