List of sequenced plant genomes

This list of sequenced plant genomes contains plant species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle only sequences. For all kingdoms, see the list of sequenced genomes.

Algae

Unicellular photosynthetic eukaryotes. For a more complete list, see the List of Sequenced Algae genomes

Organism strainCladeRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly statusLinks
Aureococcus anophagefferensHeterokontHarmful Algal Bloom50.1 Mb11,522Joint Genome Institute2011[1]The Greenhouse[2]
Auxenochlorella protothecoides Green Algae Biofuels 22.9 Mb 7,039 Tsinghua University 2014[3] The Greenhouse [2]
Bathycoccus prasinos RCC1105Green algaeComparative analysis15 MbJoint Genome Institute2012[4]
Bigelowiella natans SAR (Rhizaria) 91.4 Mb 21,708 Dalhousie University 2012[5] The Greenhouse[2]
Chlamydomonas reinhardtii CC-503 cw92 mt+Green algaeModel organism111 Mb17,737University of California at Los Angeles[6]2007"Chlamydomonas reinhardtii". National Center for Biotechnology Information (NCBI). ENA GCA_000002595
Chlorella sorokiniana str. 1228 Green Algae Biofuels 61.4 Mb Los Alamos National Lab 2018[7] The Greenhouse[2]
Chlorella sorokiniana UTEX 1230 Green Algae Biofuels 58.5 Mb Los Alamos National Lab 2018[8] The Greenhouse[2]
Chlorella sorokiniana DOE1412 Green Algae Biofuels 57.8 Mb Los Alamos National Lab 2018[9] The Greenhouse[2]
Chlorella variabilis NC64AGreen algae2010[10]
Chlorella vulgaris Green Algae Biofuels 37.3 Mb Nagoya University 1997[11] The Greenhouse[2]
Chondrus crispusRed algae (Rhodophyte)105 Mb9,606Genoscope/Station Biologique de Roscoff2013[12]
Chrysochromulina parva Haptophyte Biofuels 65.8 Mb Los Alamos National Lab 2018[13] The Greenhouse[2]
Chrysochromulina tobiniiHaptophyteModel Organism, Biofuels59 Mb16,777Los Alamos National Lab2015[14]The Greenhouse[2]
Coccomyxa subellipsoidea sp. C-169Green algaeModel biofuelJoint Genome Institute2007[15]
Cyanidioschyzon merolae Strain:10DRed algae (Rhodophyte)Photo-autotrophic16.73 Mb5,0172004,[16] 2007[17]
Cyanophora paradoxaGlaucophyteRutgers University[18]2012[18]
Dunaliella salina CCAP19/18Green algaeHalophilic, biofuel and beta-carotene production343.7 Mb16,697Joint Genome Institute2017[19][20]Dunaliella Salina Genome Portal. Phytozome
Ectocarpus siliculosusBrown algae (Heterokontophyta)distantly related to plantsStation Biologique de Roscoff2010[21]
Emiliania huxleyi Haptophyte Marine phytoplankton 167.7 Mb 39,126 Joint Genome Institute 2013[22] The Greenhouse[2]
Galdieria sulphurariaRed algae (Rhodophyte)Thermo-acidophilic (extremophile)13.7 Mb6,6232005[23] 2005[24] 2013[25]
Guillardia theta Cryptomonad Eukaryote Endosymbiosis 87.1 Mb Dalhousie University 2012[26] The Greenhouse[2]
Micromonas pusilla CCMP1545Green algaeMarine phytoplanktonJoint Genome Institute2007[27][28]
Micromonas pusilla RCC299/NOUM17Green algaeMarine phytoplanktonJoint Genome Institute2007[28][29]
Monoraphidium neglectum Green Algae Biofuels 69.7 Mb Joint Genome Institute 2017[30] The Greenhouse[2]
Nannochloropsis gaditana SAR (Heterokont) Biofuels 34.0 Mb Colorado School of Mines 2012[31] The Greenhouse[2]
Nannochloropsis oceanica SAR (Heterokont) Biofuels 31.5 Mb Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology 2016[32] The Greenhouse[2]
Nannochloropsis Salina CCMP1776 SAR (Heterokont) Biofuels, Feedstock 24.4 Mb Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology 2016[33] The Greenhouse[2]
Ostreococcus lucimarinus CCE9901Green algaeSimple eukaryote, small genome13.2 Mb7,7962007[34]
Ostreococcus tauri OTH95Green algaeSimple eukaryote, small genome2006[35]
Ostreococcus sp. RCC809Green algae7,773Joint Genome Institute2008[36]
Phaeodactylum tricornutum SAR (Heterokont) 27.4 Mb 10,402 Diatom Consortium 2008[37] The Greenhouse[2]
Picochlorum soloecismus DOE101Green algaeBiofuels15.3 MbLos Alamos National Lab2017[38]The Greenhouse[2]
Picochlorum sp. Green algae Biofuels 13.3 Mb 7,367 Rutgers University 2014[39] The Greenhouse[2]
Porphyridium purpureumRed algae (Rhodophyte)19.7 Mb8,3552013[40]
Pyropia yezoensisRed algae (Rhodophyte)43 Mb10,3272013[41]
Saccharina japonica SAR (Heterokont) Brown Algae Crop 543.4 Mb Chinese Academy of Sciences, Beijing Institutes of Life Science 2015[42] The Greenhouse[2]
Scenedesmus obliquus strain DOE0152Z Green Algae Biofuels 210.3 Mb Brooklyn College 2017[43] The Greenhouse[2]
Tetraselmis sp. Green Algae Biofuels 228 Mb Los Alamos National Lab 2018[2] The Greenhouse[2]
Thalassiosira oceanica CCMP1005 SAR (Heterokont) model organism 92.2 Mb 34,642 The Future Ocean 2012[44]
Thalassiosira pseudonana SAR (Heterokont) 32.4 Mb Diatom Consortium 2009[45] The Greenhouse[2]
Volvox carteriGreen algaeMulticellular alga, model organism~131.2 Mb14,9712010[46]

Bryophytes

Organism strainDivisionRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly status
Physcomitrella patens ssp. patens str. Gransden 2004BryophytesEarly diverging land plant2008[47]

Higher plants (vascular plants)

Organism strainDivisionRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly status
Selaginella moellendorffiiLycopodiophytaModel organism2011[48][49]

Angiosperms

Amborellales

Organism strainFamilyRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly status
Amborella trichopodaAmborellaceaeBasal angiosperm2013[50][51]

Eudicots

Ranunculales
Organism strainFamilyRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly status
Aquilegia coeruleaRanunculaceaeBasal eudicotUnpublished[52]
Proteales
Organism strainFamilyRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly status
Nelumbo nuciferaNelumbonaceaeBasal eudicot2013[53]
Caryophyllales
Organism strainFamilyRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly status
Beta vulgaris (sugar beet)ChenopodiaceaeCrop plant714–758 Mbp27,4212013[54]
Chenopodium quinoa Chenopodiaceae Crop plant 1.39–1.50 Gb 44,776 2017[55] 3,486 scaffolds, scaffold N50 of 3.84 Mb, 90% of the assembled genome is contained in 439 scaffolds[55]
Amaranthus hypocondriacus Amaranthaceae Crop plant 403.9 Mb 23,847 2016[56] 16 large scaffolds from 16.9 to 38.1 Mb. N50 and L50 of the assembly was 24.4 Mb and 7, respectively.[57]
Rosids
Organism strainFamilyRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly status
Betula pendula (silver birch)BetulaceaeBoreal forest tree440 Mbp28,399University of Helsinki2017[58]454/Illumina/PacBio

Assembly size 425 Mbp. Contig N50: 48,209 bp, scaffold N50: 239,796 bp. 89% of the assembly mapped to 14 pseudomolecules.

Betula nana (dwarf birch)BetulaceaeArctic shrub450 MbpQMUL/SBCS2013[59]
Aethionema arabicumBrassicaceaeComparative analysis of crucifer genomes2013[60]
Arabidopsis lyrataBrassicaceaemodel plant2011[61]
Arabidopsis thaliana Ecotype:ColumbiaBrassicaceaeModel plant135 Mbp2000[62]
Barbarea vulgaris

G-type

 Brassicaceae Model plant for specialised metabolites and plant defenses 2017[63]
Brassica rapa (Chinese cabbage)BrassicaceaeAssorted crops and model organism2011[64]
Capsella rubellaBrassicaceaeClose relative of Arabidopsis thaliana130Mbp26,521JGI2013?[65] 2013[66]
Eutrema salsugineumBrassicaceaeA relative of arabidopsis with high salt tolerance240Mbp26,351JGI2013[67]
Eutrema parvulumBrassicaceaeComparative analysis of crucifer genomes2013[60]
Leavenworthia alabamicaBrassicaceaeComparative analysis of crucifer genomes2013[60]
Sisymbrium irioBrassicaceaeComparative analysis of crucifer genomes2013[60]
Thellungiella parvulaBrassicaceaeA relative of arabidopsis with high salt tolerance2011[68]
Cannabis sativa (hemp)CannabaceaeHemp and marijuana productionca 820Mbp30,074 based on transcriptome assembly and clustering2011[69]Illumina/454

scaffold N50 16.2 Kbp

Carica papaya (papaya)CaricaceaeFruit crop372Mbp28,6292008[70]contig N50 11kbp

scaffold N50

1Mbp

total coverage ~3x (Sanger)

92.1% unigenes mapped

235Mbp anchored (of this 161Mbp also oriented)

KalanchoeCrassulaceae2013?[71]
Citrullus lanatus (watermelon)CucurbitaceaeVegetable cropca 425Mbp23,440BGI2012[72]Illumina

coverage 108.6x

contig N50 26.38 kbp

Scaffold N50 2.38 Mbp

genome covered 83.2%

~97% ESTs mapped

Cucumis melo (Muskmelon) DHL92CucurbitaceaeVegetable crop450Mbp27,4272012[73]454

13.5x coverage

contig N50: 18.1kbp

scaffold N50: 4.677 Mbp

WGS

Cucumis sativus (cucumber) 'Chinese long' inbred line 9930CucurbitaceaeVegetable crop350 Mbp (Kmer depth) 367 Mbp (flow cytometry)26,6822009[74]contig N50 19.8kbp

scaffold N50 1,140kbp

total coverage ~72.2 (Sanger + Ilumina)

96.8% unigenes mapped

72.8% of the genome anchored

Hevea brasiliensis (rubber tree)Euphorbiaceaethe most economically important member of the genus Hevea2013[75]
Jatropha curcas PalawanEuphorbiaceaebio-diesel crop2011[76]
Manihot esculenta (Cassava)EuphorbiaceaeHumanitarian importance~760Mb30,666JGI2012[77]
Ricinus communis (Castor bean)EuphorbiaceaeOilseed crop320Mbp31,237JCVI2010[78]Sanger coverage~4.6x contig N50 21.1 kbp scaffold N50 496.5kbp
Cajanus cajan (Pigeon pea) var. AshaFabaceaeModel legume2012[79][80]
Arachis duranensis (A genome diploid wild peanut) accession V14167FabaceaeWild ancestor of peanut, an oilseed and grain legume crop2016[81]Illumina 154x coverage, contig N50 22 kbp, scaffold N50 948 kbp
Arachis ipaensis (B genome diploid wild peanut) accession K30076 Fabaceae Wild ancestor of peanut, an oilseed and grain legume crop 2016[81] Illumina 163x coverage, contig N50 23 kbp, scaffold N50 5,343 kbp
Cicer arietinum (chickpea)Fabaceaefilling2013[82]
Cicer arietinum L. (chickpea)Fabaceae2013[83]
Glycine max (soybean) var. Williams 82FabaceaeProtein and oil crop1115Mbp46,4302010[84]Contig N50:189.4kbp

Scaffold N50:47.8Mbp

Sanger coverage ~8x

WGS

955.1 Mbp assembled

Lotus japonicus (Bird's-foot Trefoil)FabaceaeModel legume2008[85]
Medicago truncatula (Barrel Medic)FabaceaeModel legume2011[86]
Phaseolus vulgaris (common bean)FabaceaeModel bean520Mbp31,638JGI2013?[87]
Linum usitatissimum (flax)LinaceaeCrop~350Mbp43,384BGI et al.2012[88]
Durio zibethinus (Durian)MalvaceaeTropical fruit tree~738Mbp2017[89]
Gossypium raimondiiMalvaceaeOne of the putative progenitor species of tetraploid cotton2013?[90]
Theobroma cacao (cocoa tree)MalvaceaeFlavouring crop2010[91][92]
Theobroma cacao (cocoa tree) cv. Matina 1-6MalvaceaeMost widely cultivated cacao type2013[93]
Azadirachta indica (neem)MeliaceaeSource of number of Terpenoids, including biopesticide azadirachtin, Used in Traditional Medicine364 Mbp~20000GANIT Labs2012[94] and 2011[95]Illumina GAIIx, scaffold N50 of 452028bp, Transcriptome data from Shoot, Root, Leaf, Flower and Seed
Eucalyptus grandis (Rose gum)MyrtaceaeFibre and timber crop2011[96]
Fragaria vesca (wild strawberry)RosaceaeFruit crop240Mbp34,8092011[97]scaffold N50: 1.3 Mbp

454/Illumina/solid

39x coverage

WGS

Malus domestica (apple) "Golden Delicious"RosaceaeFruit crop~742.3Mbp57,3862010[98]contig N50 13.4 (kbp??)

scaffold N50 1,542.7 (kbp??)

total coverage ~16.9x (Sanger + 454)

71.2% anchored

Prunus amygdalus (almond)RosaceaeFruit crop2013?[99]
Prunus avium (sweet cherry) cv. StellaRosaceaeFruit crop2013?[99]
Prunus mume (Chinese plum or Japanese apricot)RosaceaeFruit crop2012[100]</ref>
Prunus persica (peach)RosaceaeFruit crop265Mbp27,8522013[101]Sanger coverage:8.47x

WGS

ca 99% ESTs mapped

215.9 Mbp in pseudomolecules

Pyrus bretschneideri (ya pear or Chinese white pear) cv. Dangshansuli RosaceaeFruit crop2012[102]
Pyrus communis (European pear) cv. Doyenne du ComiceRosaceaeFruit crop2013?[99]
Citrus clementina (Clementine)RutaceaeFruit crop2013?[103]
Citrus sinensis (Sweet orange)RutaceaeFruit crop2013?,[103] 2013[104]
Populus trichocarpa (poplar)SalicaceaeCarbon sequestration, model tree, timber510 Mbp (cytogenetic) 485 Mbp (coverage)73,013 [Phytozome]2006[105]Scaffold N50: 19.5 Mbp

Contig N50:552.8 Kbp [phytozome]

WGS

>=95 % cDNA found

Vitis vinifera (grape) genotype PN40024Vitaceaefruit crop2007[106]
Asterids
Organism strainFamilyRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly status
Mimulus guttatusPhrymaceaemodel system for studying ecological and evolutionary geneticsca 430Mbp26,718JGI2013?[107]Scaffold N50 = 1.1 Mbp

Contig N50 = 45.5 Kbp

Solanum lycopersicum (tomato) cv. Heinz 1706SolanaceaeFood cropca 900Mbp34,727SGN2011[108] 2012[109]Sanger/454/Illumina/Solid

Pseudomolecules spanning 91 scaffolds (760Mbp of which 594Mbp have been oriented )

over 98% ESTs mappable

Solanum pimpinellifolium (Currant Tomato)Solanaceaeclosest wild relative to tomato2012[109]Illumina

contig N50: 5100bp

~40x coverage

Solanum tuberosum (potato)SolanaceaeFood crop844 Mbp kmer (856 Mbp)39,031PGSC2011[110]Sanger/454/Illumina

79.2x coverage

contig N50: 31,429bp

scaffold N50: 1,318,511bp

Solanum commersonii (commerson's nightshade)SolanaceaeWild potato relative838 Mbp kmer (840 Mbp)37,662UNINA, UMN, UNIVR, Sequentia Biotech, CGR2015[111]Illumina

105x coverage

contig N50: 6,506bp

scaffold N50: 44,298bp

Cuscuta campestris

(field dodder)

 Solanaceae model system for parasitic plants 556 Mbp kmer (581 Mbp) 44,303 RWTH Aachen University, Research Center Jülich, UiT The Arctic University of Norway, Helmholtz Zentrum München, Technical University Munich, University of Vienna 2018[112] scaffold N50 = 1.38 Mbp
Nicotiana benthamianaSolanaceaeClose relative of tobaccoca 3Gbp2012[113]Illumina

63x coverage

contig N50: 16,480bp

scaffold N50:89,778bp

>93% unigenes found

Nicotiana sylvestris (Tobacco plant)Solanaceaemodel system for studies of terpenoid production2.636GbpPhilip Morris International2013[114]94x coverage

scaffold N50: 79.7 kbp

194kbp superscaffolds using physical Nicotiana map

Nicotiana tomentosiformisSolanaceaeTobacco progenitor2.682 GbPhilip Morris International2013[114]146x coverage

scaffold N50: 82.6 kb

166kbp superscaffolds using physical Nicotiana map

Capsicum annuum (Pepper)

(a) cv. CM334 (b) cv. Zunla-1

 Solanaceae Food crop ~3.48 Gbp (a) 34,903

(b) 35,336

 (a) 2014[115]

(b) 2014[116]

 N50 contig: (a) 30.0 kb (b) 55.4 kb

N50 scaffold: (a) 2.47 Mb (b) 1.23 Mb

Capsicum annuum var. glabriusculum (Chiltepin) Solanaceae Progenitor of cultivated pepper ~3.48 Gbp 34,476 2014[116] N50 contig: 52.2 kb

N50 scaffold: 0.45 Mb

PetuniaSolanaceaeEconomically important flower2011[117]
Utricularia gibba (humped bladderwort)Lentibulariaceaemodel system for studying genome size evolution; a carnivorous plant81.87 Mb28,494LANGEBIO, CINVESTAV2013[118]Scaffold N50: 80.839 Kb

Monocots

Grasses
Organism strainFamilyRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly status
Setaria italica (Foxtail millet)PoaceaeModel of C4 metabolism2012[119]
Aegilops tauschii (Tausch's goatgrass)Poaceaebread wheat D-genome progenitorca 4.36Gb39,6222017[120]pseudomolecule assembly
Brachypodium distachyon (purple false brome)PoaceaeModel monocot2010[121]
Dichanthelium oligosanthes (Heller's rosette grass)PoaceaeC3 grass closely related to C4 species960 MbDDPSC2016[122]
Hordeum vulgare (barley)PoaceaeModel of ecological adoptionIBSC2012[123]
Oryza brachyantha (wild rice)PoaceaeDisease resistant wild relative of rice2013[124]
Oryza glaberrima (African rice) var CG14PoaceaeWest-African species of rice2010[125]
Oryza rufipogon (red rice)PoaceaeAncestor to Oryza sativa406 Mb37,071SIBS2012[126]Illumina HiSeq2000

100x coverage

Oryza sativa (long grain rice) ssp indicaPoaceaeCrop and model cereal2002[127]
Oryza sativa (Short grain rice) ssp japonicaPoaceaeCrop and model cereal2002[128]
Panicum virgatum (switchgrass)Poaceaebiofuel2013?[129]
Phyllostachys edulis (moso bamboo)Poaceae2013[130]
Sorghum bicolor genotype BTx623PoaceaeCropca 730Mbp34,4962009[131]contig N50:195.4kbp

scaffold N50: 62.4Mbp

Sanger, 8.5x coverage

WGS

Triticum aestivum (bread wheat)Poaceae20% of global nutrition14.5Gb107,891IWGSC2018[132]pseudomolecule assembly
Triticum urartuPoaceaeBread wheat A-genome progenitorca 4.94GbBGI2013[133]Non-repetitive sequence assembled

Illumina WGS

Zea mays (maize) ssp mays B73PoaceaeCereal crop2,300Mbp39,656[134]2009[135]contig N50 40kbp

scaffold N50: 76kbp

Sanger, 4-6x coverage per BAC

Other non-grasses
Organism strainFamilyRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly status
Musa acuminata (Banana)Musaceae A-genome of modern banana cultivars 523 Mbp 36,542 2012[136] N50 contig: 43.1 kb

N50 scaffold: 1.3 Mb

Musa balbisiana (Wild banana) Musaceae B-genome of modern banana cultivars 438 Mbp 36,638 2013[137] N50 contig: 7.9 kb
Phoenix dactylifera (Date palm) Arecaceae Woody crop in arid regions 658 Mbp 28,800 2011[138] N50 contig: 6.4 kb
Elaeis guineensis (African oil palm) Arecaceae Oil-bearing crop ~1800 Mbp 34,800 2013[139] N50 scaffold: 1.27 Mb
Spirodela polyrhiza (Greater duckweed) Araceae Aquatic plant 158 bp 19,623 2014[140] N50 scaffold: 3.76 Mb
Phalaenopsis equestris (Moth orchid) Orchidaceae Breeding parent of many modern moth orchid cultivars and hybrids, Plant with crassulacean acid metabolism (CAM) 1600 Mbp 29,431 2014[141] N50 scaffold: 359,115 kb

Gymnosperm

Organism strainFamilyRelevanceGenome sizeNumber of genes predictedOrganizationYear of completionAssembly status
Picea abies (Norway spruce)PinaceaeTimber, tonewood, ornamental such as Christmas tree20 Gb28,354Umeå Plant Science Centre / SciLifeLab, Sweden2013[142]
Picea glauca (White spruce)PinaceaeTimber, Pulp20.8 Gb56,064Institutional Collaboration2013[143]
Pinus taeda (Loblolly pine)PinaceaeTimber20.15 Gb50,172Institutional collaboration2014[144][145][146]N50 scaffold size: 66.9 kbp
Ginkgo bilobaGinkgoaceae11.75 Gb41,840Institutional collaboration2016[147]N50 scaffold size: 48.2 kbp

Uncategorised things to add...

the genome from Galdieria sulphuraria has finally been published[25] Genome size is 13.7 MB, and 6623 protein-coding genes were annotated.

Nakamura et al. published the genome sequence for Pyropia yezoensis.[148]

Bhattacharya et al. published the genome of Porphyridium purpureum.[149]

Press releases announcing sequencing

Not meeting criteria of the first paragraph of this article in being nearly full sequences with high quality, published, assembled and publicly available. This list includes species where sequences are announced in press releases or websites, but not in a data-rich publication in a refereed Journal with doi.

See also

References

  1. ↑ Gobler CJ, Berry DL, Dyhrman ST, Wilhelm SW, Salamov A, Lobanov AV, et al. (March 2011). "Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics". Proceedings of the National Academy of Sciences of the United States of America. 108 (11): 4352–7. doi:10.1073/pnas.1016106108. PMC 3060233. PMID 21368207.
  2. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 "Production Strain(s)". Greenhouse Organisms.
  3. ↑ Gao C, Wang Y, Shen Y, Yan D, He X, Dai J, Wu Q (July 2014). "Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes". BMC Genomics. 15 (1): 582. doi:10.1186/1471-2164-15-582. PMC 4111847. PMID 25012212.
  4. ↑ Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, et al. (August 2012). "Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage". Genome Biology. 13 (8): R74. doi:10.1186/gb-2012-13-8-r74. PMC 3491373. PMID 22925495.
  5. ↑ Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, et al. (December 2012). "Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs". Nature. 492 (7427): 59–65. doi:10.1038/nature11681. PMID 23201678.
  6. ↑ Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, et al. (October 2007). "The Chlamydomonas genome reveals the evolution of key animal and plant functions". Science. 318 (5848): 245–50. Bibcode:2007Sci...318..245M. doi:10.1126/science.1143609. PMC 2875087. PMID 17932292.
  7. ↑ "CSI_1228 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-06.
  8. ↑ "ASM313072v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-06.
  9. ↑ "ASM311615v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-06.
  10. ↑ Blanc G, Duncan G, Agarkova I, Borodovsky M, Gurnon J, Kuo A, et al. (September 2010). "The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex". The Plant Cell. 22 (9): 2943–55. doi:10.1105/tpc.110.076406. PMC 2965543. PMID 20852019.
  11. ↑ Wakasugi T, Nagai T, Kapoor M, Sugita M, Ito M, Ito S, et al. (May 1997). "Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division". Proceedings of the National Academy of Sciences of the United States of America. 94 (11): 5967–72. PMC 20890. PMID 9159184.
  12. ↑ Collén J, Porcel B, Carré W, Ball SG, Chaparro C, Tonon T, et al. (March 2013). "Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida". Proceedings of the National Academy of Sciences of the United States of America. 110 (13): 5247–52. doi:10.1073/pnas.1221259110. PMC 3612618. PMID 23503846.
  13. ↑ "ASM288719v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-06.
  14. ↑ Hovde BT, Deodato CR, Hunsperger HM, Ryken SA, Yost W, Jha RK, et al. (2015). "Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae)". PLoS Genetics. 11 (9): e1005469. doi:10.1371/journal.pgen.1005469. PMC 4580454. PMID 26397803.
  15. ↑ "Coccomyxa". JGI entry.
  16. ↑ Matsuzaki M, Misumi O, Shin-I T, Maruyama S, Takahara M, Miyagishima SY, et al. (April 2004). "Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D". Nature. 428 (6983): 653–7. Bibcode:2004Natur.428..653M. doi:10.1038/nature02398. PMID 15071595.
  17. ↑ Nozaki H, Takano H, Misumi O, Terasawa K, Matsuzaki M, Maruyama S, Nishida K, Yagisawa F, Yoshida Y, Fujiwara T, Takio S, Tamura K, Chung SJ, Nakamura S, Kuroiwa H, Tanaka K, Sato N, Kuroiwa T (July 2007). "A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae". BMC Biology. 5: 28. doi:10.1186/1741-7007-5-28. PMID 17623057.
  18. 1 2 Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber AP, et al. (February 2012). "Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants". Science. 335 (6070): 843–7. Bibcode:2012Sci...335..843P. doi:10.1126/science.1213561. PMID 22344442.
  19. ↑ Polle JE, Barry K, Cushman J, Schmutz J, Tran D, Hathwaik LT, et al. (October 2017). "Dunaliella salina Strain CCAP19/18". Genome Announcements. 5 (43): e01105–17. doi:10.1128/genomea.01105-17. PMID 29074648.
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