Prototaxites

"Schunnemunk tree" P. loganii branching apex

The microstructure of Prototaxites under a light microscope

Scanning electron microscope view of spherical phycobiont and elongate mycobiont of Prototaxites loganii from the middle Devonian Bellvale sandstone near Monroe New York

With a diameter of up to 1 m, and a height reaching 8.8 m, Prototaxites fossils are remnants of by far the largest organism discovered from the period of its existence. Viewed from afar, the fossils take the form of tree-trunks, spreading slightly near their base in a fashion that suggests a connection to unpreserved root-like structures.[3] Infilled casts which may represent the spaces formerly occupied by "roots" of Prototaxites are common in early Devonian strata.[4] Concentric growth rings, sometimes containing embedded plant material,[5] suggest that the organism grew sporadically by the addition of external layers. It is probable that the preserved "trunks" represent the fruiting body, or "sporophore", of a fungus, which would have been fuelled by a mycelium, a net of dispersed filaments ("hyphae"). On a microscopic scale, the fossils consist of narrow tube-like structures, which weave around one another. These come in two types: skeletal "tubes", 20–50 μm across, have thick (2–6 μm) walls and are undivided for their length, and generative "filaments", which are thinner (5–10 μm diameter) and branch frequently; these mesh together to form the organism's matrix. These thinner filaments are septate—that is to say, they bear internal walls. These septa are perforate—i.e. they contain a pore, a trait only present in the modern red algae and fungi.[6]

The similarity of these tubes to structures in the early plant Nematothallus has led to suggestions that the latter may represent leaves of Prototaxites. Unfortunately for this hypothesis, the two have never been found in connection, although this may be a consequence of their detachment after the organisms' death.[7]

Dawson's 1888 reconstruction of a conifer-like Prototaxites

Prototaxites milwaukeensis (Penhallow, 1908)---a Middle Devonian species from Wisconsin

Prototaxites loganii reconstruction based on the "Skunnemunk tree" in the New York State Museum, Albany[2]

First collected in 1843,[8] it was not until 14 years later that John William Dawson, a Canadian scientist, studied Prototaxites fossils, which he described as partially rotten giant conifers, containing the remains of the fungi which had been decomposing them.[5] This concept was not disputed until 1872, when the rival scientist William Carruthers poured ridicule on the idea. Such was his fervour that he rebuked the name Prototaxites (loosely translated as "first yew"[9]) and insisted that the name Nematophycus ("stringy alga[10]") be adopted,[5] a move strongly against scientific convention.[11] Dawson fought adamantly to defend his original interpretation until studies of the microstructure made it clear that his position was untenable, whence he promptly attempted to rename the genus himself (to Nematophyton, "stringy plant"), denying with great vehemence that he'd ever considered it to be a tree.[5] Despite these political attempts to rename the genus, the rules of botanical nomenclature mean that the name "Prototaxites", however inappropriate in meaning, remains in use today.

Despite the overwhelming evidence that the organism grew on land,[12][13] Carruthers' interpretation that it was a giant marine alga was challenged just the once, in 1919, when Church suggested that Carruthers had been too quick to rule out the possibility of the fungi. The lack of any characters diagnostic of any extant group made the presentation of a firm hypothesis difficult,[5] and so the fossil remained an enigmatic mystery and subject of debate. It was not until 2001, after 20 years of research, that Francis Hueber, of Washington's National Museum of Natural History, published a long-awaited paper which attempted to put Prototaxites in its place. The paper deduced, based on its morphology, that Prototaxites was a fungus.[5]

This idea was faced with disbelief, denial and strong scepticism, but further evidence is emerging to support it.[14] In 2007, isotopic analyses by a team including Hueber and Kevin Boyce of the University of Chicago[1] concluded that Prototaxites was a giant fungus. They detected a highly variable range of values of carbon isotope ratios in a range of Prototaxites specimens; autotrophs (organisms such as plants and algae, that make a living via photosynthesis) living at the same time draw on the same (atmospheric) source of carbon; as organisms of the same type share the same chemical machinery, they reflect this atmospheric composition with a constant carbon isotope trace. The inconsistent ratio observed in Prototaxites appears to show that the organism did not survive by photosynthesis, and Boyce's team deduce that the organism fed on a range of substrates, such as the remains of whichever other organisms were nearby.[1] Nevertheless, the large size of the organism would necessitate an extensive network of subterranean mycelia in order to obtain enough organic carbon to accumulate the necessary biomass. Root-like structures have circumstantially been interpreted as Prototaxites rhizomorphs and could support the possibility of the organism transporting nutrients large distances to support its above-ground body.[15]

Other recent research has suggested that Prototaxites represents a rolled-up bundle of liverworts,[16] but this interpretation has substantial difficulties.[17]

A similar genus, Nematasketum, also consists of banded and branching tubes in axial bundles; this seems to be a fungus.[18]

Alternative views have suggested that Prototaxites was a vascular plant superficially like yew trees (hence the generic name), a kelp-like alga, or enrolled liverwort mats with associated cyanobacteria and fungal tubular elements.[16]

This organism would have been the tallest living thing in its day by far; the plant Cooksonia only reached 1 m, and itself towered over the "moss forests"; invertebrates were the only other land-dwelling multi-cellular life. Prototaxites became extinct as shrubs and vascular trees rose to prominence.[3] The organism could have used its raised platform for spore dispersal, or, if Prototaxites really did form leaves, in competition for light.[3] The University of Chicago research team has it reconstructed as a branchless, columnar structure.[19] The presence of bio-molecules often associated with the algae may suggest that the organism was covered by symbiotic (or parasitic) algae (making it in essence a huge lichen), or even that it was an alga itself.[3][20][21]

Prototaxites mycelia (strands) have been fossilised invading the tissue of vascular plants;[5] in turn, there is evidence of animals inhabiting Prototaxites: mazes of tubes have been found within some specimens, with the fungus re-growing into the voids, leading to speculation that the organisms' extinction may have been caused by such activity;[5] however, evidence of arthropod borings in Prototaxites has been found from the early and late Devonian, suggesting the organism survived the duress of boring for many millions of years.[22] Intriguingly, Prototaxites is bored long before plants developed a structurally equivalent woody stem, and it is possible that the borers transferred to plants when these evolved.[22]

• Images and discussion of the classification of Prototaxites
• "Mystery fossil turns out to be giant fungus". ABC News Online. 2007-04-23. Retrieved 2007-04-23.
• Brahic, Catherine (2007-04-24). "Mystery prehistoric fossil verified as giant fungus". New Scientist. Retrieved 2014-07-27.
• Schultz, Colin (2013-07-17). "Long Before Trees Overtook the Land, Earth Was Covered by Giant Mushrooms". Smithsonian. Retrieved 2014-07-27.
• Paul Stamets TED talk "Prototaxites" at 5'59"