Silhouette (clustering)

Silhouette refers to a method of interpretation and validation of consistency within clusters of data. The technique provides a succinct graphical representation of how well each object lies within its cluster.[1]

The silhouette value is a measure of how similar an object is to its own cluster (cohesion) compared to other clusters (separation). The silhouette ranges from −1 to +1, where a high value indicates that the object is well matched to its own cluster and poorly matched to neighboring clusters. If most objects have a high value, then the clustering configuration is appropriate. If many points have a low or negative value, then the clustering configuration may have too many or too few clusters.

The silhouette can be calculated with any distance metric, such as the Euclidean distance or the Manhattan distance.

Definition

A plot showing silhouette scores from three types of animals from the Zoo dataset as rendered by Orange data mining suite. At the bottom of the plot, silhouette identifies dolphin and porpoise as outliers in the group of mammals.

Assume the data have been clustered via any technique, such as k-means, into clusters. For each datum , let be the average distance between and all other data within the same cluster. We can interpret as a measure of how well is assigned to its cluster (the smaller the value, the better the assignment). We then define the average dissimilarity (difference / variance, according to wikipedia) of point to a cluster as the average of the distance from to all points in .

Let be the smallest average distance of to all points in any other cluster, of which is not a member. The cluster with this smallest average dissimilarity(difference/variance) is said to be the "neighbouring cluster" of because it is the next best fit cluster for point . We now define a silhouette:

Which can be also written as:

From the above definition it is clear that

Also, note that score is 0 for clusters with size = 1. This constraint is added to prevent the number of clusters from increasing significantly.

For to be close to 1 we require . As is a measure of how dissimilar is to its own cluster, a small value means it is well matched. Furthermore, a large implies that is badly matched to its neighbouring cluster. Thus an close to one means that the data is appropriately clustered. If is close to negative one, then by the same logic we see that would be more appropriate if it was clustered in its neighbouring cluster. An near zero means that the datum is on the border of two natural clusters.

The average over all points of a cluster is a measure of how tightly grouped all the points in the cluster are. Thus the average over all data of the entire dataset is a measure of how appropriately the data have been clustered. If there are too many or too few clusters, as may occur when a poor choice of is used in the clustering algorithm (e.g.: k-means), some of the clusters will typically display much narrower silhouettes than the rest. Thus silhouette plots and averages may be used to determine the natural number of clusters within a dataset. One can also increase the likelihood of the silhouette being maximized at the correct number of clusters by re-scaling the data using feature weights that are cluster specific.[2]

See also

References

  1. ↑ Peter J. Rousseeuw (1987). "Silhouettes: a Graphical Aid to the Interpretation and Validation of Cluster Analysis". Computational and Applied Mathematics. 20: 53&ndash, 65. doi:10.1016/0377-0427(87)90125-7.
  2. ↑ R.C. de Amorim, C. Hennig (2015). "Recovering the number of clusters in data sets with noise features using feature rescaling factors". Information Sciences. 324: 126&ndash, 145. arXiv:1602.06989. doi:10.1016/j.ins.2015.06.039.
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