Incomplete lineage sorting

Incomplete lineage sorting[1][2][3] is a characteristic of phylogenetic analysis where the tree produced by a single gene differs from the population or species level tree.[4]

Incomplete lineage sorting (ILS) occurs when a polymorphic ancestral species, with two or more alleles (haplotypes) at a given locus divides into two lineages. Both alleles can be retained in the descendant branches, and when one of those lineages divides again, the phylogenetic tree for that locus (the gene tree) may or may not match the branching order for the species-level evolutionary tree.[4]

References

  1. ↑ Simpson, Michael G (2010-07-19). Plant Systematics. ISBN 9780080922089.
  2. ↑ Kuritzin, A; Kischka, T; Schmitz, J; Churakov, G (2016). "Incomplete Lineage Sorting and Hybridization Statistics for Large-Scale Retroposon Insertion Data". PLOS Computational Biology. 12 (3): e1004812. Bibcode:2016PLSCB..12E4812K. doi:10.1371/journal.pcbi.1004812. PMC 4788455. PMID 26967525.
  3. ↑ Suh, A; Smeds, L; Ellegren, H (2015). "The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds". PLOS Biology. 13 (8): e1002224. doi:10.1371/journal.pbio.1002224. PMC 4540587. PMID 26284513.
  4. 1 2 Rogers, Jeffrey; Gibbs, Richard A. (2014-05-01). "Comparative primate genomics: emerging patterns of genome content and dynamics". Nature Reviews Genetics. 15 (5): 347–359. doi:10.1038/nrg3707. PMC 4113315. PMID 24709753.
  • Venema, D. (2013-08-01). "Evolution Basics: Incomplete Lineage Sorting and Ancestral Population Sizes". BioLogos. Retrieved 29 June 2018.
  • Maddison, Wayne P.; Knowles, L. Lacey; Collins, Tim (2006). "Inferring Phylogeny Despite Incomplete Lineage Sorting". Systematic Biology. 55 (1): 21–30. doi:10.1080/10635150500354928. ISSN 1076-836X. PMID 16507521.
  • Joly, Simon; McLenachan, Patricia A.; Lockhart, Peter J. (2009). "A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting". The American Naturalist. 174 (2): E54–E70. doi:10.1086/600082. PMID 19519219.
  • Carstens, Bryan C.; Knowles, L. Lacey; Collins, Tim (2007). "Estimating Species Phylogeny from Gene-Tree Probabilities Despite Incomplete Lineage Sorting: An Example from Melanoplus Grasshoppers". Systematic Biology. 56 (3): 400–411. doi:10.1080/10635150701405560. ISSN 1076-836X. PMID 17520504.


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