HDLBP

HDLBP
Available structures
PDBOrtholog search: PDBe RCSB
Identifiers
AliasesHDLBP, HBP, PRO2900, VGL, high density lipoprotein binding protein
External IDsMGI: 99256 HomoloGene: 38035 GeneCards: HDLBP
Gene location (Human)
Chr.Chromosome 2 (human)[1]
Band2q37.3Start241,227,264 bp[1]
End241,317,061 bp[1]
RNA expression pattern


More reference expression data
Orthologs
SpeciesHumanMouse
Entrez

3069

110611

Ensembl

ENSG00000115677

ENSMUSG00000034088

UniProt

Q00341

Q8VDJ3

RefSeq (mRNA)

NM_001301364
NM_133808
NM_001357556

RefSeq (protein)

NP_001288293
NP_598569
NP_001344485

Location (UCSC)Chr 2: 241.23 – 241.32 MbChr 1: 93.41 – 93.48 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Vigilin is a 110 kDa protein that in humans is encoded by the HDLBP gene.[5][6][7]

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000115677 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000034088 - Ensembl, May 2017
  3. ↑ "Human PubMed Reference:".
  4. ↑ "Mouse PubMed Reference:".
  5. ↑ McKnight GL, Reasoner J, Gilbert T, Sundquist KO, Hokland B, McKernan PA, Champagne J, Johnson CJ, Bailey MC, Holly R, et al. (Jul 1992). "Cloning and expression of a cellular high density lipoprotein-binding protein that is up-regulated by cholesterol loading of cells". J Biol Chem. 267 (17): 12131–41. PMID 1318310.
  6. ↑ Xia YR, Klisak I, Sparkes RS, Oram J, Lusis AJ (Jul 1993). "Localization of the gene for high-density lipoprotein binding protein (HDLBP) to human chromosome 2q37". Genomics. 16 (2): 524–5. doi:10.1006/geno.1993.1221. PMID 8390966.
  7. ↑ "Entrez Gene: HDLBP high density lipoprotein binding protein (vigilin)".

Further reading

  • Anderson NL, Anderson NG (2003). "The human plasma proteome: history, character, and diagnostic prospects". Mol. Cell. Proteomics. 1 (11): 845–67. doi:10.1074/mcp.R200007-MCP200. PMID 12488461.
  • Graham DL, Oram JF (1987). "Identification and characterization of a high density lipoprotein-binding protein in cell membranes by ligand blotting". J. Biol. Chem. 262 (16): 7439–42. PMID 3034894.
  • Plenz G, Kügler S, Schnittger S, et al. (1994). "The human vigilin gene: identification, chromosomal localization and expression pattern". Hum. Genet. 93 (5): 575–82. doi:10.1007/BF00202827. PMID 8168838.
  • Neu-Yilik G, Zorbas H, Gloe TR, et al. (1993). "Vigilin is a cytoplasmic protein. A study on its expression in primary cells and in established cell lines of different species". Eur. J. Biochem. 213 (2): 727–36. doi:10.1111/j.1432-1033.1993.tb17813.x. PMID 8477745.
  • Kügler S, Grünweller A, Probst C, et al. (1996). "Vigilin contains a functional nuclear localisation sequence and is present in both the cytoplasm and the nucleus". FEBS Lett. 382 (3): 330–4. doi:10.1016/0014-5793(96)00204-9. PMID 8605996.
  • Kügler S, Plenz G, Müller PK (1996). "Two additional 5' exons in the human Vigilin gene distinguish it from the chicken gene and provide the structural basis for differential routes of gene expression". Eur. J. Biochem. 238 (2): 410–7. doi:10.1111/j.1432-1033.1996.0410z.x. PMID 8681952.
  • Chiu DS, Oram JF, LeBoeuf RC, et al. (1998). "High-density lipoprotein-binding protein (HBP)/vigilin is expressed in human atherosclerotic lesions and colocalizes with apolipoprotein E.". Arterioscler. Thromb. Vasc. Biol. 17 (11): 2350–8. doi:10.1161/01.ATV.17.11.2350. PMID 9409201.
  • Kruse C, Willkomm DK, Grünweller A, et al. (2000). "Export and transport of tRNA are coupled to a multi-protein complex". Biochem. J. 346 (Pt 1): 107–15. doi:10.1042/0264-6021:3460107. PMC 1220829. PMID 10657246.
  • Bocharov AV, Vishnyakova TG, Baranova IN, et al. (2001). "Characterization of a 95 kDa high affinity human high density lipoprotein-binding protein". Biochemistry. 40 (14): 4407–16. doi:10.1021/bi001503k. PMID 11284697.
  • Wistow G, Bernstein SL, Ray S, et al. (2002). "Expressed sequence tag analysis of adult human iris for the NEIBank Project: steroid-response factors and similarities with retinal pigment epithelium". Mol. Vis. 8: 185–95. PMID 12107412.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Adkins JN, Varnum SM, Auberry KJ, et al. (2003). "Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry". Mol. Cell. Proteomics. 1 (12): 947–55. doi:10.1074/mcp.M200066-MCP200. PMID 12543931.
  • Goolsby KM, Shapiro DJ (2003). "RNAi-mediated depletion of the 15 KH domain protein, vigilin, induces death of dividing and non-dividing human cells but does not initially inhibit protein synthesis". Nucleic Acids Res. 31 (19): 5644–53. doi:10.1093/nar/gkg768. PMC 206468. PMID 14500828.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Vollbrandt T, Willkomm D, Stossberg H, Kruse C (2004). "Vigilin is co-localized with 80S ribosomes and binds to the ribosomal complex through its C-terminal domain". Int. J. Biochem. Cell Biol. 36 (7): 1306–18. doi:10.1016/j.biocel.2003.11.006. PMID 15109574.
  • Colland F, Jacq X, Trouplin V, et al. (2004). "Functional Proteomics Mapping of a Human Signaling Pathway". Genome Res. 14 (7): 1324–32. doi:10.1101/gr.2334104. PMC 442148. PMID 15231748.
  • Beausoleil SA, Jedrychowski M, Schwartz D, et al. (2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proc. Natl. Acad. Sci. U.S.A. 101 (33): 12130–5. doi:10.1073/pnas.0404720101. PMC 514446. PMID 15302935.


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