CSMD1

CSMD1
Available structures
PDBOrtholog search: PDBe RCSB
Identifiers
AliasesCSMD1, PPP1R24, CUB and Sushi multiple domains 1
External IDsMGI: 2137383 HomoloGene: 69536 GeneCards: CSMD1
Gene location (Human)
Chr.Chromosome 8 (human)[1]
Band8p23.2Start2,935,353 bp[1]
End4,994,972 bp[1]
RNA expression pattern


More reference expression data
Orthologs
SpeciesHumanMouse
Entrez

64478

94109

Ensembl

ENSG00000183117

ENSMUSG00000060924

UniProt

Q96PZ7

Q923L3

RefSeq (mRNA)

NM_033225

NM_053171

RefSeq (protein)

NP_150094

NP_444401

Location (UCSC)Chr 8: 2.94 – 4.99 MbChr 8: 15.89 – 17.54 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

CSMD1 CUB and Sushi multiple domains 1 (Homo sapiens) is a protein that in humans is encoded by the CSMD1 gene.[5] CUB is a structural motif. It is a potential tumour suppressor, the deletion of which may result in head and neck carcinomas behaving more aggressively.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000183117 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000060924 - Ensembl, May 2017
  3. ↑ "Human PubMed Reference:".
  4. ↑ "Mouse PubMed Reference:".
  5. ↑ "Entrez Gene: CSMD1 CUB and Sushi multiple domains 1".

Further reading

  • Smith DI, Zhu Y, McAvoy S, Kuhn R (2006). "Common fragile sites, extremely large genes, neural development and cancer". Cancer Lett. 232 (1): 48–57. doi:10.1016/j.canlet.2005.06.049. PMID 16221525.
  • Sun PC, Uppaluri R, Schmidt AP, et al. (2001). "Transcript map of the 8p23 putative tumor suppressor region". Genomics. 75 (1–3): 17–25. doi:10.1006/geno.2001.6587. PMID 11472063.
  • Nagase T, Kikuno R, Ohara O (2002). "Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins". DNA Res. 8 (4): 179–87. doi:10.1093/dnares/8.4.179. PMID 11572484.
  • Toomes C, Jackson A, Maguire K, et al. (2003). "The presence of multiple regions of homozygous deletion at the CSMD1 locus in oral squamous cell carcinoma question the role of CSMD1 in head and neck carcinogenesis". Genes Chromosomes Cancer. 37 (2): 132–40. doi:10.1002/gcc.10191. PMID 12696061.
  • Henshall SM, Afar DE, Hiller J, et al. (2003). "Survival analysis of genome-wide gene expression profiles of prostate cancers identifies new prognostic targets of disease relapse". Cancer Res. 63 (14): 4196–203. PMID 12874026.
  • Lau WL, Scholnick SB (2004). "Identification of two new members of the CSMD gene family". Genomics. 82 (3): 412–5. doi:10.1016/S0888-7543(03)00149-6. PMID 12906867.
  • Clark HF, Gurney AL, Abaya E, et al. (2003). "The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment". Genome Res. 13 (10): 2265–70. doi:10.1101/gr.1293003. PMC 403697. PMID 12975309.
  • Scholnick SB, Richter TM (2003). "The role of CSMD1 in head and neck carcinogenesis". Genes Chromosomes Cancer. 38 (3): 281–3. doi:10.1002/gcc.10279. PMID 14506705.
  • Clark AG, Glanowski S, Nielsen R, et al. (2003). "Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios". Science. 302 (5652): 1960–3. doi:10.1126/science.1088821. PMID 14671302.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Paris PL, Andaya A, Fridlyand J, et al. (2005). "Whole genome scanning identifies genotypes associated with recurrence and metastasis in prostate tumors". Hum. Mol. Genet. 13 (13): 1303–13. doi:10.1093/hmg/ddh155. PMID 15138198.
  • Suzuki Y, Yamashita R, Shirota M, et al. (2004). "Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions". Genome Res. 14 (9): 1711–8. doi:10.1101/gr.2435604. PMC 515316. PMID 15342556.
  • Richter TM, Tong BD, Scholnick SB (2005). "Epigenetic inactivation and aberrant transcription of CSMD1 in squamous cell carcinoma cell lines". Cancer Cell Int. 5 (1): 29. doi:10.1186/1475-2867-5-29. PMC 1239921. PMID 16153303.
  • Blaveri E, Brewer JL, Roydasgupta R, et al. (2006). "Bladder cancer stage and outcome by array-based comparative genomic hybridization". Clin. Cancer Res. 11 (19 Pt 1): 7012–22. doi:10.1158/1078-0432.CCR-05-0177. PMID 16203795.
  • Nusbaum C, Mikkelsen TS, Zody MC, et al. (2006). "DNA sequence and analysis of human chromosome 8". Nature. 439 (7074): 331–5. doi:10.1038/nature04406. PMID 16421571.
  • Kraus DM, Elliott GS, Chute H, et al. (2006). "CSMD1 is a novel multiple domain complement-regulatory protein highly expressed in the central nervous system and epithelial tissues". J. Immunol. 176 (7): 4419–30. doi:10.4049/jimmunol.176.7.4419. PMID 16547280.


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