CCBE1

CCBE1
Identifiers
Aliases	CCBE1, HKLLS1, collagen and calcium binding EGF domains 1
External IDs	MGI: 2445053 HomoloGene: 15852 GeneCards: CCBE1
Gene location (Human)
Chr.	Chromosome 18 (human)[1]
End	59,697,380 bp[1]
Gene location (Mouse)
Chr.	Chromosome 18 (mouse)[2]
End	66,302,739 bp[2]
Gene ontology
Molecular function	• protease binding; • calcium ion binding; • protein binding; • collagen binding;
Cellular component	• extracellular region; • collagen trimer; • extracellular space; • extracellular matrix;
Biological process	• positive regulation of endothelial cell migration; • multicellular organism development; • positive regulation of vascular endothelial growth factor production; • sprouting angiogenesis; • positive regulation of lymphangiogenesis; • positive regulation of protein processing; • angiogenesis; • positive regulation of vascular endothelial growth factor signaling pathway; • venous blood vessel morphogenesis; • lymphangiogenesis; • positive regulation of angiogenesis; • lymph vessel development; • lung development; • respiratory gaseous exchange; • respiratory system process;
	Sources:Amigo / QuickGO
Orthologs
	147372
	320924
	ENSG00000183287
	ENSMUSG00000046318
	Q6UXH8
	Q3MI99
	NM_133459
	NM_178793
	NP_597716
	NP_848908
	Wikidata
View/Edit Human	View/Edit Mouse

Collagen and calcium-binding EGF domain-containing protein 1 is a protein that in humans is encoded by the CCBE1 gene.^[5]^[6]

Function

This gene is thought to function in extracellular matrix remodeling and migration. It is predominantly expressed in the ovary, but down regulated in ovarian cancer cell lines and primary carcinomas, suggesting its role as a tumor suppressor.^[5]

Clinical significance

Mutation in the CCBE1 gene may be associated with Hennekam syndrome, a generalized lymphatic dysplasia in humans .^[7]

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000183287 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000046318 - Ensembl, May 2017
↑ "Human PubMed Reference:".
↑ "Mouse PubMed Reference:".
1 2 "Entrez Gene: collagen and calcium binding EGF domains 1".
↑ Nagase T, Kikuno R, Ohara O (December 2001). "Prediction of the coding sequences of unidentified human genes. XXII. The complete sequences of 50 new cDNA clones which code for large proteins". DNA Res. 8 (6): 319–27. doi:10.1093/dnares/8.6.319. PMID 11853319.
↑ Alders M, Hogan BM, Gjini E, Salehi F, Al-Gazali L, Hennekam EA, Holmberg EE, Mannens MM, Mulder MF, Offerhaus GJ, Prescott TE, Schroor EJ, Verheij JB, Witte M, Zwijnenburg PJ, Vikkula M, Schulte-Merker S, Hennekam RC (December 2009). "Mutations in CCBE1 cause generalized lymph vessel dysplasia in humans". Nat. Genet. 41 (12): 1272–4. doi:10.1038/ng.484. PMID 19935664.

External links

Human CCBE1 genome location and CCBE1 gene details page in the UCSC Genome Browser.

Barton CA, Gloss BS, Qu W, et al. (2010). "Collagen and calcium-binding EGF domains 1 is frequently inactivated in ovarian cancer by aberrant promoter hypermethylation and modulates cell migration and survival". Br. J. Cancer. 102 (1): 87–96. doi:10.1038/sj.bjc.6605429. PMC 2813742. PMID 19935792.
Browning SR, Thomas J (2007). "Multilocus analysis of GAW15 NARAC chromosome 18 case-control data". BMC Proceedings. 1 Suppl 1: S11. PMC 2367534. PMID 18466450.
Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
Uhl GR, Liu QR, Drgon T, et al. (2008). "Molecular Genetics of Successful Smoking Cessation: Convergent Genome-Wide Association Study Results". Arch. Gen. Psychiatry. 65 (6): 683–93. doi:10.1001/archpsyc.65.6.683. PMC 2430596. PMID 18519826.
Hogan BM, Bos FL, Bussmann J, et al. (2009). "Ccbe1 is required for embryonic lymphangiogenesis and venous sprouting". Nat. Genet. 41 (4): 396–8. doi:10.1038/ng.321. PMID 19287381.
Clark HF, Gurney AL, Abaya E, et al. (2003). "The Secreted Protein Discovery Initiative (SPDI), a Large-Scale Effort to Identify Novel Human Secreted and Transmembrane Proteins: A Bioinformatics Assessment". Genome Res. 13 (10): 2265–70. doi:10.1101/gr.1293003. PMC 403697. PMID 12975309.
Strausberg RL, Feingold EA, Grouse LH, et al. (2002). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Connell F, Kalidas K, Ostergaard P, et al. (2010). "Linkage and sequence analysis indicate that CCBE1 is mutated in recessively inherited generalised lymphatic dysplasia". Hum. Genet. 127 (2): 231–41. doi:10.1007/s00439-009-0766-y. PMID 19911200.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000183287 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000046318 - Ensembl, May 2017

[3] "Human PubMed Reference:".

[4] "Mouse PubMed Reference:".

[entrez-5] 1 2 "Entrez Gene: collagen and calcium binding EGF domains 1".

[pmid11853319-6] Nagase T, Kikuno R, Ohara O (December 2001). "Prediction of the coding sequences of unidentified human genes. XXII. The complete sequences of 50 new cDNA clones which code for large proteins". DNA Res. 8 (6): 319–27. doi:10.1093/dnares/8.6.319. PMID 11853319.

[pmid19935664-7] Alders M, Hogan BM, Gjini E, Salehi F, Al-Gazali L, Hennekam EA, Holmberg EE, Mannens MM, Mulder MF, Offerhaus GJ, Prescott TE, Schroor EJ, Verheij JB, Witte M, Zwijnenburg PJ, Vikkula M, Schulte-Merker S, Hennekam RC (December 2009). "Mutations in CCBE1 cause generalized lymph vessel dysplasia in humans". Nat. Genet. 41 (12): 1272–4. doi:10.1038/ng.484. PMID 19935664.

CCBE1

Function

Clinical significance

References

External links

Further reading