Stemloc
Stemloc is a program for pairwise RNA structural alignment based on probabilistic models of RNA structure known as Pair stochastic context-free grammars. Stemloc implements constrained versions of the Sankoff algorithms for simultaneous structure prediction and sequence alignment of multiple RNAs.
| Developer(s) | Ian Holmes (UC Berkeley) |
|---|---|
| Stable release | 1
|
| Operating system | UNIX, Linux, Mac, Cygwin on Windows XP |
| Type | Bioinformatics tool |
| Licence | Open source |
| Website | Stemloc homepage |
Stemloc can be downloaded as part of the DART software package. It accepts input files in either FASTA or Stockholm format.
References
- Holmes I. (2005) Accelerated probabilistic inference of RNA structure evolution. BMC Bioinformatics. 2005 Mar 24;6:73.
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