List of neuroimaging software
Neuroimaging software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site.
- 3D Slicer Extensible, free open source multi-purpose software for visualization and analysis.
- Amira 3D visualization and analysis software
- Analysis of Functional NeuroImages (AFNI)
- Analyze developed by the Biomedical Imaging Resource (BIR) at Mayo Clinic.
- Brain Image Analysis Package
- CamBA
- Caret Van Essen Lab, Washington University in St. Louis
- CONN (functional connectivity toolbox)
- Diffusion Imaging in Python (DIPY)[1]
- EEGLAB
- FMRIB Software Library (FSL)
- FreeSurfer
- ISAS (Ictal-Interictal SPECT Analysis by SPM)
- LONI Pipeline, Laboratory of Neuro Imaging, USC
- Mango,[2]
- Neurophysiological Biomarker Toolbox
- NITRC The Neuroimaging Informatics Tools and Resources Clearinghouse. An NIH funded database of neuroimaging tools
- Seed-based d mapping (previously signed differential mapping, SDM): a method for conducting meta-analyses of voxel-based neuroimaging studies.
- The Spinal Cord Toolbox (SCT) is the first comprehensive and open-source software for processing MR images of the spinal cord.[3]
- Statistical parametric mapping (SPM)
References
- Garyfallidis, Eleftherios; Brett, Matthew; Amirbekian, Bagrat; Rokem, Ariel; van der Walt, Stefan; Descoteaux, Maxime; Nimmo-Smith, Ian; Dipy Contributors (2014). "Dipy, a library for the analysis of diffusion MRI data". Frontiers in Neuroinformatics. 8: 8. doi:10.3389/fninf.2014.00008. ISSN 1662-5196. PMC 3931231. PMID 24600385.
- Sadigh-Eteghad S, Majdi A, Farhoudi M, Talebi M, Mahmoudi J (2014). "Different patterns of brain activation in normal aging and Alzheimer's disease from cognitional sight: meta analysis using activation likelihood estimation". Journal of the Neurological Sciences. 343 (1): 159–66. doi:10.1016/j.jns.2014.05.066. PMID 24950901.
- Cohen-Adad J, De Leener B, Benhamou M, Cadotte D, Fleet D, Cadotte A, Fehlings MG, Pelletier Paquette JP, Thong W, Taso M, Collins DL, Callot V, Fonov V. Spinal Cord Toolbox: an open-source framework for processing spinal cord MRI data. Proceedings of the 20th Annual Meeting of OHBM, Hamburg, Germany 2014:3633
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