List of contaminated cell lines
Many cell lines that are widely used for biomedical research have been overgrown by other, more aggressive cells. For example, supposed thyroid lines were actually melanoma cells, supposed prostate tissue was actually bladder cancer, and supposed normal uterine cultures were actually breast cancer.[1] This is a list of cell lines that have been cross-contaminated and overgrown by other cells. Estimates based on screening of leukemia-lymphoma cell lines suggest that about 15% of these cell lines are not representative of what they are usually assumed to be.[2] A project is currently underway to enumerate and rename contaminated cell lines to avoid errors in research caused by misattribution.[3][4][lower-alpha 1]
Contaminated cell lines have been extensively used in research without knowledge of their true character. For example, most if not all research on the endothelium ECV-304 or the megakaryocyte DAMI cell lines has in reality been conducted on bladder carcinoma and erythroleukemia cells, respectively. Thus, all research on endothelium- or megakaryocyte-specific functions utilizing these cell lines has turned out to be misguided, serving more of a warning example.
There are two principal ways a cell line can become contaminated: cell cultures are often exchanged between research groups; if, during handling, a sample gets contaminated and then passed on, subsequent exchanges of cells will lead to the contaminating population being established, although parts of the supposed cell line are still genuine. More serious is contamination at the source: during establishment of the original cell line, some contaminating cells are accidentally introduced into the cultures, where they in time outgrow the desired cells. The initial testing, in this case, still suggested that the cell line is genuine and novel, but in reality, it has disappeared soon after being established and all samples of such cell lines are actually the contaminant cells. It requires lengthy research to determine the precise point where cell lines have become contaminated. A mix-up rated as contamination could in reality be a simple confusion of two cell lines, but usually contamination is assumed.
After a cell line has been discovered to be contaminated, they are usually never used again for research demanding the specific type of cell line they are assumed to be. Most contaminated cell lines are discarded, however sometimes contaminant cells have acquired novel characteristics (e.g., by mutation or viral transfection, for example the HeLa derivate Det98) and thus constitute a novel lineage after all, so are not thrown away. If a cell line is thought to be contaminated, it is usually tested for authenticity.[lower-alpha 2] The widespread contamination of HeLa cells was initially recognized by Walter Nelson-Rees using simple Giemsa stain karyotyping under a light microscope. This technique works well in recognizing HeLa because these cells have distinctive chromosome aberrations. Novel cell lines are proliferated and distributed and/or deposited at a safekeeping institution such as the ATCC as soon as possible after establishment, to minimize the odds that the line becomes spoiled by contamination. It is considered good practice to periodically check cell lines maintained under laboratory conditions (i.e., not placed in long-term storage) for contamination with HeLa or other common contaminants, to ensure that their quality and integrity is maintained.
Lists of contaminated cell lines
This list, containing 488 cell lines, was last updated on 1 December 2016.[lower-alpha 3]
Cellosaurus also is maintaining a list of "problematic" cell lines.[6] The list is dynamically generated from all cell lines in the database with a comment containing the dedicated words "Problematic cell line". As of 17 January 2017, the list contains 757 entries.
If no species is given in the individual entries of the following tables, the table's species applies to both the assumed and the actual cell types.
Cell lines marked Virtual in the table below are known instances of contamination at the source; these cell lines became extinct or never existed. Cases where non-contaminated lines are known or strongly suspected to exist are marked Existent.
Contaminated human cell lines
Contaminated non-human cell lines
| Supposed cell line | Existent? | Supposed cell type | Real cell line | Real cell type | Reference | Cellosaurus |
|---|---|---|---|---|---|---|
| Aedes vexans, [Culiseta inornata], Aedes aegypti Suitor's clone | N/A | unknown | Emperor Gum Moth ovary? | [8] | CVCL_1R46, CVCL_1R47, CVCL_1R48 | |
| GPS-M, GPS-PD | Guinea pig spleen | Strain L-M | Laboratory mouse connective tissue | [8] | CVCL_1R31, CVCL_1R32 | |
| LT-1 | Leopard frog renal adenocarcinoma | TH-1/FHM | Eastern box turtle heart / Fathead minnow epithelium | [8] | CVCL_1R49 |
Notes
- The original citation was ambiguous on which of these citations was being referenced, so both have been added here.
- The citations of this article contain some papers on how common contaminates can be recognized.
- An updated list can be obtained from International Cell Line Authentication Committee website.[5]
References
- Jill Neimark (27 February 2015). "Line of attack". Science. 347 (6225): 938–940. Bibcode:2015Sci...347..938N. doi:10.1126/science.347.6225.938. PMID 25722392.
- Masters, John R. (April 2002). "HeLa cells 50 years on: the good, the bad and the ugly". Nature Reviews Cancer. 2 (4): 315–319. doi:10.1038/nrc775. ISSN 1474-175X. PMID 12001993.
- Drexler, H. G.; Quentmeier, H.; Dirks, W. G.; Uphoff, C. C.; MacLeod, R. a. F. (September 2002). "DNA profiling and cytogenetic analysis of cell line WSU-CLL reveal cross-contamination with cell line REH (pre B-ALL)". Leukemia. 16 (9): 1868–1870. doi:10.1038/sj.leu.2402610. ISSN 1476-5551. PMID 12200708.
- Drexler, Hans G.; Uphoff, Cord C.; Dirks, Willy G.; MacLeod, Roderick A. F. (2002-04-01). "Mix-ups and mycoplasma: the enemies within". Leukemia Research. 26 (4): 329–333. doi:10.1016/S0145-2126(01)00136-9. ISSN 0145-2126. PMID 11839374.
- "Database of Cross-Contaminated or Misidentified Cell Lines" (PDF). iclac.org. January 12, 2016. Retrieved 2019-05-10.
- "Cellosaurus search result: 757 hits for 'problematic cell line'". Cellosaurus. Swiss Institute of Bioinformatics. Retrieved 17 January 2018. The reference includes the list of linked pages in the search result.
- Dirks, Wilhelm G.; MacLeod, Roderick A. F.; Drexler, Hans G. (November 1999). "ECV304 (endothelial) is really T24 (bladder carcinoma): Cell line cross-contamination at source". In Vitro Cellular & Developmental Biology - Animal. 35 (10): 558–559. doi:10.1007/s11626-999-0091-8. ISSN 1071-2690. PMID 10614862.
- Nelson-Rees, W.; Daniels, D.; Flandermeyer, R. (1981-04-24). "Cross-contamination of cells in culture". Science. 212 (4493): 446–452. Bibcode:1981Sci...212..446N. doi:10.1126/science.6451928. ISSN 0036-8075. PMID 6451928.
- Drexler, Hg; Dirks, Wg; MacLeod, Raf (October 1999). "False human hematopoietic cell lines: cross-contaminations and misinterpretations". Leukemia. 13 (10): 1601–1607. doi:10.1038/sj.leu.2401510. ISSN 0887-6924. PMID 10516762.
- Nelson-Rees, W. A.; Flandermeyer, R. R. (1976). "HeLa cultures defined". Science. 191 (4222): 96–98. Bibcode:1976Sci...191...96N. doi:10.1126/science.1246601. PMID 1246601.
Bibliography
- Chen, TR (1988). "Re-evaluation of HeLa, HeLa S3, and HEp-2 karyotypes". Cytogenet Cell Genet. 48 (1): 19–24. doi:10.1159/000132579. PMID 3180844.
- Dirks, Willy G.; MacLeod, Roderick A. F.; Drexler, Hans G. (1999). "ECV304 (endothelial) is really T24 (bladder carcinoma): cell line cross-contamination at source". In Vitro Cellular & Developmental Biology. 35 (10): 558–559. doi:10.1007/s11626-999-0091-8.
- Drexler, Hans G.; Dirks, Willy G.; MacLeod, Roderick A. F. (1999). "False human hematopoietic cell lines: cross-contaminations and misinterpretations". Leukemia. 13 (10): 1601–1607. doi:10.1038/sj.leu.2401510. PMID 10516762.
- Drexler, Hans G.; MacLeod, Roderick A. F.; Dirks, Willy G. (2001). "Cross-contamination: HS-Sultan is not a myeloma but a Burkitt lymphoma cell line" (PDF). Blood. 98 (12): 3495–3496. doi:10.1182/blood.v98.12.3495. PMID 11732505.
- Drexler, Hans G.; Quentmeier, H.; Dirks, Willy G.; Uphoff, Cord C.; MacLeod, Roderick A. F. (2002a). "DNA profiling and cytogenetic analysis of cell line WSU-CLL reveal cross-contamination with cell line REH (pre B-ALL)". Leukemia. 16 (9): 1868–1870. doi:10.1038/sj.leu.2402610. PMID 12200708.
- Drexler, Hans G.; Uphoff, Cord C.; Dirks, Willy G.; MacLeod, Roderick A. F. (2002b). "Mix-ups and mycoplasma: the enemies within". Leukemia Research. 26 (4): 329–333. doi:10.1016/S0145-2126(01)00136-9. PMID 11839374.
- Drexler, Hans G.; Dirks, Willy G.; Matsuo, Y.; MacLeod, Roderick A. F. (2003). "False leukemia–lymphoma cell lines: an update on over 500 cell lines". Leukemia. 17 (2): 416–426. doi:10.1038/sj.leu.2402799. PMID 12592342.
- Lacroix, Marc (2008). "Persistent use of "false" cell lines". International Journal of Cancer. 122 (1): 1–4. doi:10.1002/ijc.23233. PMID 17960586.
- Liscovitch, Mordechai; Ravid, Dana (January 2007). "A case study in misidentification of cancer cell lines: MCF-7/AdrR cells (re-designated NCI/ADR-RES) are derived from OVCAR-8 human ovarian carcinoma cells". Cancer Letters. 245 (1–2): 350–352. doi:10.1016/j.canlet.2006.01.013. PMID 16504380.
- MacLeod, Roderick A. F.; Dirks, Willy G.; Drexler, Hans G. (1997a). "Early Contamination of the Dami Cell Line by HEL". Blood. 90 (7): 2850–2851. doi:10.1182/blood.v90.7.2850.2850_2850_2850.
- MacLeod, Roderick A. F.; Dirks, Willy G.; Reid, Y. A.; Hay, R. J.; Drexler, Hans G. (1997b). "Identity of original and late passage Dami megakaryocytes with HEL erythroleukemia cells shown by combined cytogenetics and DNA fingerprinting". Leukemia. 11 (12): 2032–2038. doi:10.1038/sj.leu.2400868. PMID 9447816.
- MacLeod, Roderick A. F.; Dirks, Willy G.; Matsuo, Y.; Kaufmann, M.; Milch, H.; Drexler, Hans G. (1999). "Widespread intraspecies cross-contamination of human tumor cell lines arising at source". International Journal of Cancer. 83 (4): 555–563. doi:10.1002/(sici)1097-0215(19991112)83:4<555::aid-ijc19>3.0.co;2-2. PMID 10508494.
- Masters, John R (2002). "HeLa cells 50 years on: the good, the bad and the ugly". Nature Reviews Cancer. 2 (4): 315–319. doi:10.1038/nrc775. PMID 12001993.
- Nelson-Rees, W. A.; Flandermeyer, R. R. (1976). "HeLa cultures defined". Science. 191 (4222): 96–98. Bibcode:1976Sci...191...96N. doi:10.1126/science.1246601. PMID 1246601.
- Nelson-Rees, W. A.; Daniels, D. W.; Flandermeyer, R. R. (1981). "Cross-contamination of cells in culture". Science. 212 (4493): 446–452. Bibcode:1981Sci...212..446N. doi:10.1126/science.6451928. PMID 6451928.
- Unger, Ronald E.; Krump-Konvalinkova, V.; Peters, K.; Kirkpatrick, C. J. (2002). "In Vitro Expression of the Endothelial Phenotype: Comparative Study of Primary Isolated Cells and Cell Lines, Including the Novel Cell Line HPMEC-ST1.6R". Microvascular Research. 64 (3): 384–397. doi:10.1006/mvre.2002.2434. PMID 12453433.
External links
- Cellosaurus list of problematics (contaminated/misidentified) cell lines