Humus

It is difficult to define humus precisely because it is a very complex substance which is not fully understood. Humus is different from decomposing soil organic matter. The latter looks rough and has visible remains of the original plant or animal matter. Fully humified humus, on the contrary, has a uniformly dark, spongy, and jelly-like appearance, and is amorphous; it may gradually decompose over several years or persist for millennia.[7] It has no determinate shape, structure, or quality. However, when examined under a microscope, humus may reveal tiny plant, animal, or microbial remains that have been mechanically, but not chemically, degraded.[8] This suggests an ambiguous boundary between humus and soil organic matter. While distinct, humus is an integral part of soil organic matter.[9]

Microorganisms decompose a large portion of the soil organic matter into inorganic minerals that the roots of plants can absorb as nutrients. This process is termed "mineralization". In this process, nitrogen (nitrogen cycle) and the other nutrients (nutrient cycle) in the decomposed organic matter are recycled. Depending on the conditions in which the decomposition occurs, a fraction of the organic matter does not mineralize, and instead is transformed by a process called "humification" into concatenations of organic polymers. Because these organic polymers are resistant to the action of microorganisms, they are stable, and constitute humus. This stability implies that humus integrates into the permanent structure of the soil, thereby improving it.[10]

Humification can occur naturally in soil or artificially in the production of compost. Organic matter is humified by a combination of saprotrophic fungi, bacteria, microbes and animals such as earthworms, nematodes, protozoa, and arthropods.[11] Plant remains, including those that animals digested and excreted, contain organic compounds: sugars, starches, proteins, carbohydrates, lignins, waxes, resins, and organic acids. Decay in the soil begins with the decomposition of sugars and starches from carbohydrates, which decompose easily as detritivores initially invade the dead plant organs, while the remaining cellulose and lignin decompose more slowly.[12] Simple proteins, organic acids, starches, and sugars decompose rapidly, while crude proteins, fats, waxes, and resins remain relatively unchanged for longer periods of time. Lignin, which is quickly transformed by white-rot fungi,[13] is one of the primary precursors of humus,[14] together with by-products of microbial[15] and animal[16] activity. The humus produced by humification is thus a mixture of compounds and complex biological chemicals of plant, animal, or microbial origin that has many functions and benefits in soil. Some judge earthworm humus (vermicompost) to be the optimal organic manure.[17]

Much of the humus in most soils has persisted for more than 100 years, rather than having been decomposed into CO₂, and can be regarded as stable; this organic matter has been protected from decomposition by microbial or enzyme action because it is hidden (occluded) inside small aggregates of soil particles, or tightly sorbed or complexed to clays.[18] Most humus that is not protected in this way is decomposed within 10 years and can be regarded as less stable or more labile. Stable humus contributes few plant-available nutrients in soil, but it helps maintain its physical structure.[19] A very stable form of humus is formed from the slow oxidation of soil carbon after the incorporation of finely powdered charcoal into the topsoil. This process is speculated to have been important in the formation of the very fertile Amazonian terra preta do Indio.[20]

Humus has a characteristic black or dark brown color and is organic due to an accumulation of organic carbon. Soil scientists use the capital letters O, A, B, C, and E to identify the master horizons, and lowercase letters for distinctions of these horizons. Most soils have three major horizons: the surface horizon (A), the subsoil (B), and the substratum (C). Some soils have an organic horizon (O) on the surface, but this horizon can also be buried. The master horizon (E) is used for subsurface horizons that have significantly lost minerals (eluviation). Bedrock, which is not soil, uses the letter R.

The importance of chemically stable humus is thought by some to be the fertility it provides to soils in both a physical and chemical sense,[21] though some agricultural experts put a greater focus on other features of it, such as its ability to suppress disease.[22] It helps the soil retain moisture[23] by increasing microporosity,[24] and encourages the formation of good soil structure.[25][26] The incorporation of oxygen into large organic molecular assemblages generates many active, negatively charged sites that bind to positively charged ions (cations) of plant nutrients, making them more available to the plant by way of ion exchange.[27] Humus allows soil organisms to feed and reproduce, and is often described as the "life-force" of the soil.[28][29]

• The process that converts soil organic matter into humus feeds the population of microorganisms and other creatures in the soil, and thus maintains high and healthy levels of soil life.[28][29]
• The rate at which soil organic matter is converted into humus promotes (when fast) or limits (when slow) the coexistence of plants, animals, and microorganisms in the soil.
• Effective humus and stable humus are additional sources of nutrients for microbes: the former provides a readily available supply and the latter acts as a longeval storage reservoir.
• Decomposition of dead plant material causes complex organic compounds to be slowly oxidized (lignin-like humus) or to decompose into simpler forms (sugars and amino sugars, and aliphatic and phenolic organic acids), which are further transformed into microbial biomass (microbial humus) or reorganized, and further oxidized, into humic assemblages (fulvic acids and humic acids), which bind to clay minerals and metal hydroxides. The ability of plants to absorb humic substances with their roots and metabolize them has been long debated. There is now a consensus that humus functions hormonally rather than simply nutritionally in plant physiology.[30][31]
• Humus is a colloidal substance and increases the cation exchange capacity of soil, hence its ability to store nutrients by chelation. While these nutrient cations are available to plants, they are held in the soil and prevented from being leached by rain or irrigation.[27]
• Humus can hold the equivalent of 80–90% of its weight in moisture, and therefore increases the soil's capacity to withstand drought.[32][33]
• The biochemical structure of humus enables it to moderate, i.e. buffer, excessive acidic or alkaline soil conditions.[34]
• During humification, microbes secrete sticky, gum-like mucilages; these contribute to the crumby structure (tilth) of the soil by adhering particles together and allowing greater aeration of the soil.[35] Toxic substances such as heavy metals and excess nutrients can be chelated, i. e., bound to the organic molecules of humus, and so prevented from leaching away.[36]
• The dark, usually brown or black, color of humus helps to warm cold soils in Spring.

• Jerzy Weber. "Types of humus in soils". Agricultural University of Wroclaw, Poland. Retrieved 12 December 2013.
• Wershaw, R.L. "Evaluation of conceptual models of natural organic matter (humus) from a consideration of the chemical and biochemical processes of humification" (PDF). pubs.usgs.gov. USGS. Retrieved 14 March 2016.
• IHSS. "What are Humic Substances?". International Humic Substances Society. Retrieved 19 February 2018.