CLRN1

Clarin-1 is a protein that in humans is encoded by the CLRN1 gene.[5][6][7]

CLRN1
Identifiers
AliasesCLRN1, RP61, USH3, USH3A, clarin 1
External IDsOMIM: 606397 MGI: 2388124 HomoloGene: 17738 GeneCards: CLRN1
Gene location (Human)
Chr.Chromosome 3 (human)[1]
Band3q25.1Start150,926,163 bp[1]
End150,972,999 bp[1]
Orthologs
SpeciesHumanMouse
Entrez

7401

229320

Ensembl

ENSG00000163646

ENSMUSG00000043850

UniProt

P58418

Q8K445

RefSeq (mRNA)

NM_001195794
NM_001256819
NM_052995
NM_174878
NM_174880

NM_153384
NM_153385
NM_153386

RefSeq (protein)

NP_001182723
NP_001243748
NP_443721
NP_777367

NP_700433
NP_700434
NP_700435

Location (UCSC)Chr 3: 150.93 – 150.97 MbChr 3: 58.84 – 58.89 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Function

This gene encodes a protein that contains a cytosolic N-terminus, multiple helical transmembrane domains, and an endoplasmic reticulum membrane retention signal, TKGH, in the C-terminus. The encoded protein may be important in development and homeostasis of the inner ear and retina. Mutations within this gene have been associated with Usher syndrome type IIIa. Multiple transcript variants encoding distinct isoforms have been identified for this gene.[7]

References

  1. GRCh38: Ensembl release 89: ENSG00000163646 - Ensembl, May 2017
  2. GRCm38: Ensembl release 89: ENSMUSG00000043850 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Sankila EM, Pakarinen L, Kaariainen H, Aittomaki K, Karjalainen S, Sistonen P, de la Chapelle A (May 1995). "Assignment of an Usher syndrome type III (USH3) gene to chromosome 3q". Hum Mol Genet. 4 (1): 93–8. doi:10.1093/hmg/4.1.93. PMID 7711740.
  6. Joensuu T, Blanco G, Pakarinen L, Sistonen P, Kaariainen H, Brown S, Chapelle A, Sankila EM (Mar 1997). "Refined mapping of the Usher syndrome type III locus on chromosome 3, exclusion of candidate genes, and identification of the putative mouse homologous region". Genomics. 38 (3): 255–63. doi:10.1006/geno.1996.0626. PMID 8975700.
  7. "Entrez Gene: CLRN1 clarin 1".

Further reading


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