List of systems biology visualization software

Online software

Name	Description	Site
GESTALT Workbench	graphical workbench for analysis of large-scale genomic sequence data
N-Browse	interactive graphical browser for biological networks
NetPath	curated resource of human signal transduction pathways
MEGA	free, online, open-source, phylogenetic analysis, drawing dendrograms etc.
REACTOME	free, online, open-source, curated pathway database encompassing many areas of human biology
WikiPathways	curate biological pathways

Name	Description	OS	License
BioTapestry	interactive tool for building, visualizing, and simulating genetic regulatory networks	multiplatform (Java-based)	LGPL
Cytoscape	data integration, network visualization, and analysis	multiplatform (Java-based)	LGPL
GenMAPP	visualize and analyze genomic data in the context of pathways	Windows	Apache License
MEGA	free, online, open-source, phylogenetic analysis, drawing dendrograms etc.	Windows/DOS-Win/Mac/Linux	Shareware
PathVisio	tool for displaying and editing biological pathways	multiplatform (Java-based)	Apache License
InCroMAP	tool for the integration of omics data and joint visualization of experimental data in pathways	multiplatform (Java-based)	LGPL
Pathview	pathway based data integration and visualization, easy to use and integrate into pathway analysis	multiplatform (R/Bioconductor)	GPL

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